Set the SQLALCHEMY_DATABASE_URI env differently

see https://flask-sqlalchemy.palletsprojects.com/en/3.1.x/api/#flask_sqlalchemy.SQLAlchemy.get_engine

.drone.yml

@@ -26,7 +26,7 @@ steps:
       - pipenv install --dev
       - pipenv run flake8
       - pipenv run reuse lint
-      - pipenv run python -m unittest discover ki
+      - SQLALCHEMY_DATABASE_URI=sqlite:// pipenv run python -m unittest discover ki
   - name: docker-dry-run
     image: plugins/docker:20.18.4@sha256:a8d3d86853c721492213264815f1d00d3ed13f42f5c1855a02f47fa4d5f1e042
     settings:
@@ -114,7 +114,7 @@ steps:
       - pipenv install --dev
       - pipenv run flake8
       - pipenv run reuse lint
-      - pipenv run python -m unittest discover ki
+      - SQLALCHEMY_DATABASE_URI=sqlite:// pipenv run python -m unittest discover ki
   - name: docker-publish
     image: plugins/docker:20.18.4@sha256:a8d3d86853c721492213264815f1d00d3ed13f42f5c1855a02f47fa4d5f1e042
     settings:

Pipfile

@@ -11,8 +11,8 @@ name = "pypi"
 flask = "==2.3.3"
 python-dotenv = "==1.0.1"
 flask-migrate = "==4.0.7"
-flask-sqlalchemy  = "==2.5.1"
+flask-sqlalchemy  = "==3.1.1"
-sqlalchemy = "==1.4.54"
+sqlalchemy = "==2.0.34"
 waitress = "==2.1.2"
 pyyaml = "==6.0.2"
 flask-cors = "==5.0.0"

Pipfile.lock

@@ -1,7 +1,7 @@
 {
     "_meta": {
         "hash": {
-            "sha256": "c99f25fb2e022052be3e6fecf72c39fe3d6e4817b7f0608a094a3262fd1cc34b"
+            "sha256": "ac7fa43860ec02cfc3b312b32f550fe4f4f3632ab485cd31465e0f6a655567fb"
         },
         "pipfile-spec": 6,
         "requires": {
@@ -68,84 +68,12 @@
         },
         "flask-sqlalchemy": {
             "hashes": [
-                "sha256:2bda44b43e7cacb15d4e05ff3cc1f8bc97936cc464623424102bfc2c35e95912",
+                "sha256:4ba4be7f419dc72f4efd8802d69974803c37259dd42f3913b0dcf75c9447e0a0",
-                "sha256:f12c3d4cc5cc7fdcc148b9527ea05671718c3ea45d50c7e732cceb33f574b390"
+                "sha256:e4b68bb881802dda1a7d878b2fc84c06d1ee57fb40b874d3dc97dabfa36b8312"
             ],
             "index": "pypi",
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
+            "markers": "python_version >= '3.8'",
-            "version": "==2.5.1"
+            "version": "==3.1.1"
-        },
-        "greenlet": {
-            "hashes": [
-                "sha256:01059afb9b178606b4b6e92c3e710ea1635597c3537e44da69f4531e111dd5e9",
-                "sha256:037d9ac99540ace9424cb9ea89f0accfaff4316f149520b4ae293eebc5bded17",
-                "sha256:0e49a65d25d7350cca2da15aac31b6f67a43d867448babf997fe83c7505f57bc",
-                "sha256:13ff8c8e54a10472ce3b2a2da007f915175192f18e6495bad50486e87c7f6637",
-                "sha256:1544b8dd090b494c55e60c4ff46e238be44fdc472d2589e943c241e0169bcea2",
-                "sha256:184258372ae9e1e9bddce6f187967f2e08ecd16906557c4320e3ba88a93438c3",
-                "sha256:1ddc7bcedeb47187be74208bc652d63d6b20cb24f4e596bd356092d8000da6d6",
-                "sha256:221169d31cada333a0c7fd087b957c8f431c1dba202c3a58cf5a3583ed973e9b",
-                "sha256:243a223c96a4246f8a30ea470c440fe9db1f5e444941ee3c3cd79df119b8eebf",
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-                "sha256:26811df4dc81271033a7836bc20d12cd30938e6bd2e9437f56fa03da81b0f8fc",
-                "sha256:26d9c1c4f1748ccac0bae1dbb465fb1a795a75aba8af8ca871503019f4285e2a",
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-                "sha256:2cd8518eade968bc52262d8c46727cfc0826ff4d552cf0430b8d65aaf50bb91d",
-                "sha256:2d004db911ed7b6218ec5c5bfe4cf70ae8aa2223dffbb5b3c69e342bb253cb28",
-                "sha256:3d07c28b85b350564bdff9f51c1c5007dfb2f389385d1bc23288de51134ca303",
-                "sha256:3e7e6ef1737a819819b1163116ad4b48d06cfdd40352d813bb14436024fcda99",
-                "sha256:44151d7b81b9391ed759a2f2865bbe623ef00d648fed59363be2bbbd5154656f",
-                "sha256:44cd313629ded43bb3b98737bba2f3e2c2c8679b55ea29ed73daea6b755fe8e7",
-                "sha256:4a3dae7492d16e85ea6045fd11cb8e782b63eac8c8d520c3a92c02ac4573b0a6",
-                "sha256:4b5ea3664eed571779403858d7cd0a9b0ebf50d57d2cdeafc7748e09ef8cd81a",
-                "sha256:4c3446937be153718250fe421da548f973124189f18fe4575a0510b5c928f0cc",
-                "sha256:5415b9494ff6240b09af06b91a375731febe0090218e2898d2b85f9b92abcda0",
-                "sha256:5fd6e94593f6f9714dbad1aaba734b5ec04593374fa6638df61592055868f8b8",
-                "sha256:619935a44f414274a2c08c9e74611965650b730eb4efe4b2270f91df5e4adf9a",
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-                "sha256:665b21e95bc0fce5cab03b2e1d90ba9c66c510f1bb5fdc864f3a377d0f553f6b",
-                "sha256:6a4bf607f690f7987ab3291406e012cd8591a4f77aa54f29b890f9c331e84989",
-                "sha256:6cea1cca3be76c9483282dc7760ea1cc08a6ecec1f0b6ca0a94ea0d17432da19",
-                "sha256:713d450cf8e61854de9420fb7eea8ad228df4e27e7d4ed465de98c955d2b3fa6",
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-                "sha256:90b5bbf05fe3d3ef697103850c2ce3374558f6fe40fd57c9fac1bf14903f50a5",
-                "sha256:9730929375021ec90f6447bff4f7f5508faef1c02f399a1953870cdb78e0c345",
-                "sha256:9eb4a1d7399b9f3c7ac68ae6baa6be5f9195d1d08c9ddc45ad559aa6b556bce6",
-                "sha256:a0409bc18a9f85321399c29baf93545152d74a49d92f2f55302f122007cfda00",
-                "sha256:a22f4e26400f7f48faef2d69c20dc055a1f3043d330923f9abe08ea0aecc44df",
-                "sha256:a53dfe8f82b715319e9953330fa5c8708b610d48b5c59f1316337302af5c0811",
-                "sha256:a771dc64fa44ebe58d65768d869fcfb9060169d203446c1d446e844b62bdfdca",
-                "sha256:a814dc3100e8a046ff48faeaa909e80cdb358411a3d6dd5293158425c684eda8",
-                "sha256:a8870983af660798dc1b529e1fd6f1cefd94e45135a32e58bd70edd694540f33",
-                "sha256:ac0adfdb3a21dc2a24ed728b61e72440d297d0fd3a577389df566651fcd08f97",
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-                "sha256:b9505a0c8579899057cbefd4ec34d865ab99852baf1ff33a9481eb3924e2da0b",
-                "sha256:c0a5b1c22c82831f56f2f7ad9bbe4948879762fe0d59833a4a71f16e5fa0f682",
-                "sha256:c3967dcc1cd2ea61b08b0b276659242cbce5caca39e7cbc02408222fb9e6ff39",
-                "sha256:c6f4c2027689093775fd58ca2388d58789009116844432d920e9147f91acbe64",
-                "sha256:c9d86401550b09a55410f32ceb5fe7efcd998bd2dad9e82521713cb148a4a15f",
-                "sha256:cd468ec62257bb4544989402b19d795d2305eccb06cde5da0eb739b63dc04665",
-                "sha256:cfcfb73aed40f550a57ea904629bdaf2e562c68fa1164fa4588e752af6efdc3f",
-                "sha256:d0dd943282231480aad5f50f89bdf26690c995e8ff555f26d8a5b9887b559bcc",
-                "sha256:d3c59a06c2c28a81a026ff11fbf012081ea34fb9b7052f2ed0366e14896f0a1d",
-                "sha256:d45b75b0f3fd8d99f62eb7908cfa6d727b7ed190737dec7fe46d993da550b81a",
-                "sha256:d46d5069e2eeda111d6f71970e341f4bd9aeeee92074e649ae263b834286ecc0",
-                "sha256:d58ec349e0c2c0bc6669bf2cd4982d2f93bf067860d23a0ea1fe677b0f0b1e09",
-                "sha256:db1b3ccb93488328c74e97ff888604a8b95ae4f35f4f56677ca57a4fc3a4220b",
-                "sha256:dd65695a8df1233309b701dec2539cc4b11e97d4fcc0f4185b4a12ce54db0491",
-                "sha256:f9482c2ed414781c0af0b35d9d575226da6b728bd1a720668fa05837184965b7",
-                "sha256:f9671e7282d8c6fcabc32c0fb8d7c0ea8894ae85cee89c9aadc2d7129e1a9954",
-                "sha256:fad7a051e07f64e297e6e8399b4d6a3bdcad3d7297409e9a06ef8cbccff4f501",
-                "sha256:ffb08f2a1e59d38c7b8b9ac8083c9c8b9875f0955b1e9b9b9a965607a51f8e54"
-            ],
-            "markers": "python_version >= '3' and platform_machine == 'aarch64' or (platform_machine == 'ppc64le' or (platform_machine == 'x86_64' or (platform_machine == 'amd64' or (platform_machine == 'AMD64' or (platform_machine == 'win32' or platform_machine == 'WIN32')))))",
-            "version": "==3.1.0"
         },
         "importlib-metadata": {
             "hashes": [
@@ -352,54 +280,59 @@
         },
         "sqlalchemy": {
             "hashes": [
-                "sha256:02d2ecb9508f16ab9c5af466dfe5a88e26adf2e1a8d1c56eb616396ccae2c186",
+                "sha256:10d8f36990dd929690666679b0f42235c159a7051534adb135728ee52828dd22",
-                "sha256:0b76bbb1cbae618d10679be8966f6d66c94f301cfc15cb49e2f2382563fb6efb",
+                "sha256:13be2cc683b76977a700948411a94c67ad8faf542fa7da2a4b167f2244781cf3",
-                "sha256:0de620f978ca273ce027769dc8db7e6ee72631796187adc8471b3c76091b809e",
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-                "sha256:1183599e25fa38a1a322294b949da02b4f0da13dbc2688ef9dbe746df573f8a6",
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-                "sha256:1d83cd1cc03c22d922ec94d0d5f7b7c96b1332f5e122e81b1a61fb22da77879a",
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-                "sha256:cdb2886c0be2c6c54d0651d5a61c29ef347e8eec81fd83afebbf7b59b80b7393",
+                "sha256:bcd18441a49499bf5528deaa9dee1f5c01ca491fc2791b13604e8f972877f812",
-                "sha256:d0cf7076c8578b3de4e43a046cc7a1af8466e1c3f5e64167189fe8958a4f9c02",
+                "sha256:bd90c221ed4e60ac9d476db967f436cfcecbd4ef744537c0f2d5291439848768",
-                "sha256:f1e1b92ee4ee9ffc68624ace218b89ca5ca667607ccee4541a90cc44999b9aea",
+                "sha256:c29d03e0adf3cc1a8c3ec62d176824972ae29b67a66cbb18daff3062acc6faa8",
-                "sha256:f941aaf15f47f316123e1933f9ea91a6efda73a161a6ab6046d1cde37be62c88",
+                "sha256:c3330415cd387d2b88600e8e26b510d0370db9b7eaf984354a43e19c40df2e2b",
-                "sha256:fb59a11689ff3c58e7652260127f9e34f7f45478a2f3ef831ab6db7bcd72108f",
+                "sha256:c7db3db284a0edaebe87f8f6642c2b2c27ed85c3e70064b84d1c9e4ec06d5d84",
-                "sha256:fc9ffd9a38e21fad3e8c5a88926d57f94a32546e937e0be46142b2702003eba7"
+                "sha256:ce119fc4ce0d64124d37f66a6f2a584fddc3c5001755f8a49f1ca0a177ef9796",
+                "sha256:dbcdf987f3aceef9763b6d7b1fd3e4ee210ddd26cac421d78b3c206d07b2700b",
+                "sha256:e54ef33ea80d464c3dcfe881eb00ad5921b60f8115ea1a30d781653edc2fd6a2",
+                "sha256:e60ed6ef0a35c6b76b7640fe452d0e47acc832ccbb8475de549a5cc5f90c2c06",
+                "sha256:fb1b30f31a36c7f3fee848391ff77eebdd3af5750bf95fbf9b8b5323edfdb4ec",
+                "sha256:fbb034f565ecbe6c530dff948239377ba859420d146d5f62f0271407ffb8c580"
             ],
             "index": "pypi",
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4, 3.5'",
+            "markers": "python_version >= '3.7'",
-            "version": "==1.4.54"
+            "version": "==2.0.34"
         },
         "typing-extensions": {
             "hashes": [

app.py

@@ -38,7 +38,7 @@ app.config["KI_LDAP_AUTH_PASSWORD"] = os.getenv("KI_LDAP_AUTH_PASSWORD")
 app.config["KI_LDAP_BASE_DN"] = os.getenv("KI_LDAP_BASE_DN")
 
 CORS(app)
-db = SQLAlchemy(app)
+db = SQLAlchemy(app, session_options={"future": True})
 migrate = Migrate(app, db, compare_type=True)
 
 app.logger.info("Hello from KI")

ki/actions/seed.py

@@ -19,7 +19,7 @@ def seed_contacttypes():
 
         for contacttype in csv_reader:
             id = int(contacttype["id"])
-            db_contacttype = ContactType.query.get(id)
+            db_contacttype = db.session.get(ContactType, id)
 
             if db_contacttype is None:
                 db.session.add(ContactType(id=int(contacttype["id"]), name=contacttype["name"]))
@@ -88,6 +88,7 @@ def seed_user(auth_id,
 
 
 def seed(dev: bool):
+    with app.app_context():
         seed_contacttypes()
 
         skill_seed_file_path = app.config["KI_DATA_DIR"] + "/seed_data/skills.csv"
@@ -99,7 +100,7 @@ def seed(dev: bool):
 
             for skill in skills_csv_reader:
                 id = int(skill["id"])
-            db_skill = Skill.query.get(id)
+                db_skill = db.session.get(Skill, id)
 
                 if db_skill is None:
                     db.session.add(Skill(id=int(skill["id"]), name=skill["name"]))
@@ -113,7 +114,7 @@ def seed(dev: bool):
 
             for iso in iso_csv_reader:
                 id = iso["639-1"]
-            db_language = Language.query.get(id)
+                db_language = db.session.get(Language, id)
 
                 if db_language is None:
                     db.session.add(Language(id=iso["639-1"], name=iso["Sprache"]))
@@ -136,7 +137,8 @@ def seed(dev: bool):
                       skills=[(3, 3), (1, 5)],
                       searchtopics=[3, 1],
                       languages=[("de", 5), ("fr", 3)],
-                  address=("Peter Nichtlustig", "Waldweg", "23i", "Hinterhaus", "13337", "Bielefeld", "Deutschland"),
+                      address=("Peter Nichtlustig", "Waldweg", "23i", "Hinterhaus", "13337", "Bielefeld",
+                               "Deutschland"),
                       contacts=[(4, "@peter:wtf-eg.de"), (1, "peter@wtf-eg.de")])
 
             seed_user("dirtydieter",

ki/handlers/update_profile.py

@@ -33,7 +33,7 @@ def update_languages(profile, languages_data):
         if "id" not in language_data["language"]:
             continue
 
-        language = Language.query.get(language_data["language"]["id"])
+        language = db.session.get(Language, language_data["language"]["id"])
         profile_language = ProfileLanguage.query.filter(ProfileLanguage.profile == profile,
                                                         ProfileLanguage.language == language).first()
 
@@ -110,7 +110,7 @@ def update_contacts(profile, contacts_data):
         if "id" in contact_data:
             contact_id = int(contact_data["id"])
             contact_ids_to_be_deleted.remove(contact_id)
-            contact = Contact.query.get(contact_id)
+            contact = db.session.get(Contact, contact_id)
         else:
             contact = Contact(profile=profile, contacttype=contacttype)
             db.session.add(contact)
@@ -122,7 +122,7 @@ def update_contacts(profile, contacts_data):
 
 
 def update_profile(user_id: int):
-    user = User.query.get(user_id)
+    user = db.session.get(User, user_id)
 
     if user is None:
         return make_response({}, 404)

ki/routes.py

@@ -10,7 +10,7 @@ from ki.auth import auth
 from ki.handlers import find_profiles as find_profiles_handler
 from ki.handlers import update_profile as update_profile_handler
 from ki.models import ContactType, Language, Skill, Token, User
-from app import app
+from app import app, db
 
 content_type_svg = "image/svg+xml"
 content_type_png = "image/png"
@@ -66,7 +66,7 @@ def handle_completion_request(model, key):
 
 
 def handle_icon_request(model, id, path):
-    object = model.query.get(id)
+    object = db.session.get(model, id)
 
     if object is None:
         return make_response({}, 404)

ki/test/ApiTest.py

@@ -31,6 +31,7 @@ class ApiTest(unittest.TestCase):
             self.max_skill_id = max_skill.id
 
     def tearDown(self):
+        with app.app_context():
             db.drop_all()
             db.engine.dispose()
 

ki/test/test_languages_endpoint.py

@@ -33,6 +33,7 @@ class TestLanguagesEndpoint(ApiTest):
         self.assertEqual(response.status_code, 200)
         self.assertIn("Content-Type", response.headers)
         self.assertEqual(response.headers["Content-Type"], "image/svg+xml; charset=utf-8")
+        response.close()
 
 
 if __name__ == "main":

ki/test/test_profile_endpoint.py

@@ -20,6 +20,7 @@ class TestProfileEndpoint(ApiTest):
         self.assertEqual(login_response.status_code, 200)
         self.assertIn("token", login_response.json)
 
+        with app.app_context():
             babsi = User.query.filter(User.auth_id == "babsi1").first()
             response = self.client.post(f"/users/{babsi.id}/profile",
                                         data=json.dumps({}),
@@ -103,6 +104,7 @@ class TestProfileEndpoint(ApiTest):
                 "level": 2
             }]
         }
+        with app.app_context():
             peter = User.query.filter(User.auth_id == "peter").first()
             response = self.client.post(f"/users/{peter.id}/profile",
                                         data=json.dumps(data),
@@ -185,6 +187,7 @@ class TestProfileEndpoint(ApiTest):
     def test_get_visible_proifle(self):
         token = self.login("peter", "geheim")["token"]
 
+        with app.app_context():
             babsi = User.query.filter(User.auth_id == "babsi1").first()
             response = self.client.get(f"/users/{babsi.id}/profile", headers={"Authorization": f"Bearer {token}"})
 
@@ -197,6 +200,7 @@ class TestProfileEndpoint(ApiTest):
         self.assertEqual(login_response.status_code, 200)
         self.assertIn("token", login_response.json)
 
+        with app.app_context():
             peter = User.query.filter(User.auth_id == "peter").first()
             response = self.client.get(f"/users/{peter.id}/profile",
                                        headers={"Authorization": "Bearer " + login_response.json["token"]})

ki/test/test_skills_endpoint.py

@@ -41,12 +41,14 @@ class TestSkillsEndpoint(ApiTest):
         self.assertEqual(response.status_code, 200)
         self.assertIn("Content-Type", response.headers)
         self.assertEqual(response.headers["Content-Type"], "image/svg+xml; charset=utf-8")
+        response.close()
 
     def test_get_fallback_skill_icon(self):
         response = self.client.get("/skills/2/icon")
         self.assertEqual(response.status_code, 200)
         self.assertIn("Content-Type", response.headers)
         self.assertEqual(response.headers["Content-Type"], "image/svg+xml; charset=utf-8")
+        response.close()
 
 
 if __name__ == "main":

migrations/env.py

@@ -19,7 +19,7 @@ logger = logging.getLogger('alembic.env')
 # target_metadata = mymodel.Base.metadata
 config.set_main_option(
     'sqlalchemy.url',
-    str(current_app.extensions['migrate'].db.get_engine().url).replace(
+    str(current_app.extensions['migrate'].db.engine.url).replace(
         '%', '%%'))
 target_metadata = current_app.extensions['migrate'].db.metadata
 
@@ -68,7 +68,7 @@ def run_migrations_online():
                 directives[:] = []
                 logger.info('No changes in schema detected.')
 
-    connectable = current_app.extensions['migrate'].db.get_engine()
+    connectable = current_app.extensions['migrate'].db.engine
 
     with connectable.connect() as connection:
         context.configure(